SJBSM supports a large variety of student organizations. Currently, students can become part of almost 30 different student groups. The focus of these groups, ranging from service to specialty interests, are extremely diverse and offer a wide variety of activities for students to engage in and outside of the classroom. 

1. Consejo General de Estudiantes
2. Radiology Interest Group
3. Internal Medicine Interest Group
4. Family Medicine
5. Latino Medical Student Association LMSA
6. Surgery Interest Group (SIG) & Association of Women Surgeons (AWS) Chapter
7. SJB Christian Fellowship
8. Pediatric Interest Group          
9. Grupo Interés de Anestesiología
10. Emergency Interest Group
11. Orthopedic Surgery Interest Group
12. Obstetrics and Gynecology & Women’s Health
13. SJB Mini Med
14. Oncology Interest Group
15. Dermatology Interest Group Association
16. Infectious Diseases Interest Group
17. AMWA American Medical Women Association 
18. Por Una Sonrisa
19. SJB: PAWS Impacting Lives in the Medical Community
20. Ped Meds
21. American Medical Society of Sport Medicine Association
22. Physical Medicine and Rehabilitation
23. Clinical Reasoning Interest Group
24. Interdisciplinary Autoimmune Disease
25. Pathology Interest Group
26. SJB Psychiatry Interest Group
27. SJB Student Interest Group in Neurology
28. Por Una Sonrisa
29. Asociación Enfermería SJB
30. Bioethics Organization
31. Movilización Comunitaria San Juan Bautista